MolNFT v1 · #142417 · protein
Crystal structure of cytochrome C' from shewanella violacea DSS12
6A3L: “Crystal structure of cytochrome C' from shewanella violacea DSS12”. X-ray diffraction, 1 ligand (HEC), 2 pockets (best druggability 0.63). MolNFT v1 #142417 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6A3L
- Type
- protein
- Length
- 258 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome C
- UniProt
- D4ZGZ2
- Ligands
- HEC
- Pockets
- 2 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 71% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Cytochrome C | protein | 129 | 71% helix, 2% strand | D4ZGZ2 |
Ligands and binding sites
- HEC · Heme C · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 190 | 0.63 | 0.83 | 26 | HEC |
| 2 | 170 | 0.62 | 0.83 | 28 | HEC |
Interfaces
1 interface between chains.
- A–B · 795 Ų buried · 14 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 cofactor (heme c attachment).
Compared structures
- 6A3L · Crystal structure of cytochrome c' from Shewanella violacea DSS12 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D4ZGZ2
- Elsewhere: RCSB PDB 6A3L · PDBe 6A3L · UniProt D4ZGZ2
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