MolNFT v1 · #142416 · protein
Crystal structure of cytochrome C' from shewanella benthica DB6705
6A3K: “Crystal structure of cytochrome C' from shewanella benthica DB6705”. X-ray diffraction, 1 ligand (HEC), 1 pocket (best druggability 0.65). MolNFT v1 #142416 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6A3K
- Type
- protein
- Length
- 129 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome C
- Ligands
- HEC
- Pockets
- 1 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 71% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytochrome C | protein | 129 | 71% helix, 2% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 168 | 0.65 | 0.85 | 26 | HEC |
Modifications
Observed in the structure: 2 cofactor (heme c attachment).
Compared structures
- 6A3K · Crystal structure of cytochrome c' from Shewanella benthica DB6705 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6A3K · PDBe 6A3K
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