MolNFT v1 · #142387 · protein
Crystal structure of wild type plasmodium falciparum DHFR-ts complexed with BT3, NADPH, and dump
6A2O · Bifunctional dihydrofolate reductase-thymidylate synthase: “Crystal structure of wild type plasmodium falciparum DHFR-ts complexed with BT3, NADPH, and dump”. X-ray diffraction, 3 ligands (9RR, NAP, UMP), 16 pockets (best…
- PDB
- 6A2O
- Type
- protein
- Length
- 1,089 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Bifunctional dihydrofolate reductase-thymidylate synthase
- UniProt
- A7UD81
- Ligands
- 9RR, NAP, UMP
- Pockets
- 16 · best druggability 0.74
Structure
x-ray diffraction · 2 distinct chains · 32% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Bifunctional dihydrofolate reductase-thymidylate synthase | protein | 547 | 33% helix, 24% strand | A7UD81 |
| B | Bifunctional dihydrofolate reductase-thymidylate synthase | protein | 542 | 31% helix, 25% strand | A7UD81 |
Ligands and binding sites
- 9RR · 5,5'-[propane-1,3-diylbis(oxy-4,1-phenylene)]bis(6-ethylpyrimidine-2,4-diamine) · ligand · 2 copies · chains A, B
- NAP · Nadp nicotinamide-adenine-dinucleotide phosphate · ligand · 2 copies · chains A, B
- UMP · 2'-deoxyuridine 5'-monophosphate · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
16 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 543 | 0.74 | 0.82 | 50 | 9RR, NAP |
| 2 | 529 | 0.73 | 0.81 | 50 | 9RR, NAP |
| 3 | 552 | 0.71 | 0.80 | 51 | UMP |
| 4 | 675 | 0.71 | 0.78 | 66 | UMP |
| 5 | 263 | 0.50 | 0.74 | 38 | empty |
Interfaces
1 interface between chains.
- A–B · 4226 Ų buried · 58 hydrogen bonds · protein-protein
Compared structures
- 6A2O · Crystal structure of wild type Plasmodium falciparum DHFR-TS complexed with BT3, NADPH… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A7UD81
- Elsewhere: RCSB PDB 6A2O · PDBe 6A2O · UniProt A7UD81
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