MolNFT v1 · #142374 · protein
Crystal structure of a synthase 2 from santalum album
6A2A · Sesquisabinene B synthase 2: “Crystal structure of a synthase 2 from santalum album”. X-ray diffraction, 18 pockets (best druggability 0.79). MolNFT v1 #142374 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6A2A
- Type
- protein
- Length
- 1,048 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sesquisabinene B synthase 2
- UniProt
- A0A0A0RCB5
- Pockets
- 18 · best druggability 0.79
Structure
x-ray diffraction · 2 distinct chains · 73% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sesquisabinene B synthase 2 | protein | 528 | 72% helix, 1% strand | A0A0A0RCB5 |
| B | Sesquisabinene B synthase 2 | protein | 520 | 74% helix, 1% strand | A0A0A0RCB5 |
Pockets
18 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 849 | 0.79 | 0.81 | 48 | empty |
| 2 | 616 | 0.72 | 0.80 | 60 | empty |
| 3 | 649 | 0.72 | 0.79 | 60 | empty |
| 4 | 372 | 0.72 | 0.83 | 41 | empty |
| 5 | 329 | 0.68 | 0.82 | 36 | empty |
Interfaces
1 interface between chains.
- A–B · 1005 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 6A2A · Crystal structure of a synthase 2 from santalum album · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0A0RCB5
- Elsewhere: RCSB PDB 6A2A · PDBe 6A2A · UniProt A0A0A0RCB5
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