MolNFT v1 · #142356 · DNA
Crystal structures of disordered Z-type helices
6A1Q · DNA (5'-D(P*TP*GP*TP*G)-3'): “Crystal structures of disordered Z-type helices”. X-ray diffraction, 1 pocket (best druggability 0.39). MolNFT v1 #142356 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6A1Q
- Type
- DNA
- Length
- 24 nucleotides
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(P*TP*GP*TP*G)-3'); DNA (5'-D(P*CP*AP*CP*A)-3')
- Pockets
- 1 · best druggability 0.39
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, E | DNA (5'-D(P*TP*GP*TP*G)-3') | dna | 4 | — | — |
| B, D, F | DNA (5'-D(P*CP*AP*CP*A)-3') | dna | 4 | — | — |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 140 | 0.39 | 0.75 | 19 | empty |
Interfaces
5 interfaces between chains.
- C–D · 225 Ų buried · 22 hydrogen bonds · nucleic-nucleic
- E–F · 225 Ų buried · 21 hydrogen bonds · nucleic-nucleic
- A–B · 222 Ų buried · 20 hydrogen bonds · nucleic-nucleic
- C–F · 120 Ų buried · 1 hydrogen bond · nucleic-nucleic
- B–C · 65 Ų buried · 0 hydrogen bonds · nucleic-nucleic
Compared structures
- 6A1Q · Crystal structures of disordered Z-type helices · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6A1Q · PDBe 6A1Q
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