MolNFT v1 · #142319 · protein
The crystal structure of apo-LPG2622
6A0N: “The crystal structure of apo-LPG2622”. X-ray diffraction, 5 pockets (best druggability 0.48). MolNFT v1 #142319 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6A0N
- Type
- protein
- Length
- 649 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- LPG2622
- UniProt
- Q5ZS97
- Pockets
- 5 · best druggability 0.48
Structure
x-ray diffraction · 2 distinct chains · 30% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | LPG2622 | protein | 329 | 30% helix, 30% strand | Q5ZS97 |
| B | LPG2622 | protein | 320 | 31% helix, 29% strand | Q5ZS97 |
Pockets
5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 159 | 0.48 | 0.77 | 30 | empty |
| 2 | 77 | 0.33 | 0.75 | 20 | empty |
| 3 | 59 | 0.32 | 0.76 | 15 | empty |
| 4 | 81 | 0.31 | 0.73 | 17 | empty |
| 5 | 72 | 0.31 | 0.74 | 13 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 6A0N · The crystal structure of apo-Lpg2622 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5ZS97
- Elsewhere: RCSB PDB 6A0N · PDBe 6A0N · UniProt Q5ZS97
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