MolNFT v1 · #142278 · protein

X-ray structure of F43Y/H64D sperm whale myoglobin in complex with tcp

5ZZG: “X-ray structure of F43Y/H64D sperm whale myoglobin in complex with tcp”. X-ray diffraction, 2 ligands (HEM, T6C), 1 pocket (best druggability 0.70). MolNFT v1 #142278 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5ZZG
Type: protein
Length: 153 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Myoglobin
UniProt: P02185
Ligands: HEM, T6C
Pockets: 1 · best druggability 0.70

Structure

x-ray diffraction · 1 distinct chain · 76% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Myoglobin	protein	153	76% helix, 0% strand	P02185

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A
T6C · 2,4,6-trichlorophenol · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	294	0.70	0.83	29	HEM, T6C

Compared structures

5ZZG · X-ray structure of F43Y/H64D sperm whale myoglobin in complex with TCP · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P02185
Elsewhere: RCSB PDB 5ZZG · PDBe 5ZZG · UniProt P02185

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