MolNFT v1 · #142257 · protein

Structure of NEPHRIN/MAGI1 complex

5ZYS · Membrane-associated guanylate kinase, ww and PDZ domain…: “Structure of NEPHRIN/MAGI1 complex”. X-ray diffraction. MolNFT v1 #142257 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5ZYS
Type: protein
Length: 100 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Membrane-associated guanylate kinase, ww and PDZ domain- containing protein 1; Nephrin
UniProt: Q6RHR9

Structure

x-ray diffraction · 2 distinct chains · 19% helix, 40% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Membrane-associated guanylate kinase, ww and PDZ domain- containing protein 1	protein	90	21% helix, 42% strand	Q6RHR9
B	Nephrin	protein	10	0% helix, 20% strand	—

Interfaces

1 interface between chains.

A–B · 518 Å² buried · 12 hydrogen bonds · protein-protein

Compared structures

5ZYS · Structure of Nephrin/MAGI1 complex · the same entry in another collection · chain A against A, TM-score 1.00
Q6RHR9 · AlphaFold monomer V2.0 prediction for membrane-associated guanylate kinase, ww and PDZ… · a predicted model of the same protein · chain A against A, TM-score 0.90

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6RHR9
Elsewhere: RCSB PDB 5ZYS · PDBe 5ZYS · UniProt Q6RHR9

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