MolNFT v1 · #142149 · protein + RNA
Crystal structure of ATCPSF30 yth domain in complex with 10MER M6A- modified RNA
5ZUU: “Crystal structure of ATCPSF30 yth domain in complex with 10MER M6A- modified RNA”. X-ray diffraction. MolNFT v1 #142149 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5ZUU
- Type
- protein + RNA
- Length
- 650 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A9LNK9
Structure
x-ray diffraction · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C | — | protein | 174 | — | A9LNK9 |
| A | — | protein | 162 | — | A9LNK9 |
| B | — | protein | 149 | — | A9LNK9 |
| D | — | protein | 147 | — | A9LNK9 |
| E, F | — | rna | 5 | — | — |
| G, I | — | rna | 4 | — | — |
Ligands and binding sites
- GOL · Glycerol · additive · chains A, B
- EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5ZUU · Crystal structure of AtCPSF30 YTH domain in complex with 10mer m6A-modified RNA · the same entry in another collection · chain I against I, TM-score 1.00
- A9LNK9 · AlphaFold monomer V2.0 prediction for 30-kda cleavage and polyadenylation specificity… · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A9LNK9
- Elsewhere: RCSB PDB 5ZUU · PDBe 5ZUU · UniProt A9LNK9
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