MolNFT v1 · #142108 · protein

X-ray crystal structure of pseudoazurin MET16VAL variant

5ZTD: “X-ray crystal structure of pseudoazurin MET16VAL variant”. X-ray diffraction, 1 ligand (CU), 1 pocket (best druggability 0.66). MolNFT v1 #142108 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5ZTD
Type: protein
Length: 248 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Pseudoazurin
UniProt: P19567
Ligands: CU
Pockets: 1 · best druggability 0.66

Structure

x-ray diffraction · 1 distinct chain · 18% helix, 37% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Pseudoazurin	protein	124	18% helix, 37% strand	P19567

Ligands and binding sites

CU · Copper (II) ion · metal · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	454	0.66	0.79	43	empty

Interfaces

1 interface between chains.

A–B · 356 Å² buried · 12 hydrogen bonds · protein-protein

Compared structures

5ZTD · X-ray Crystal Structure of Pseudoazurin Met16Val Variant · the same entry in another collection · chain A against A, TM-score 1.00
P19567 · AlphaFold monomer V2.0 prediction for pseudoazurin (P19567) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P19567
Elsewhere: RCSB PDB 5ZTD · PDBe 5ZTD · UniProt P19567

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