MolNFT v1 · #14209 · protein
Beta-lactam synthetase apo enzyme
1M1Z: “Beta-lactam synthetase apo enzyme”. X-ray diffraction, 14 pockets (best druggability 0.74). MolNFT v1 #14209 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1M1Z
- Type
- protein
- Length
- 970 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-lactam synthetase
- UniProt
- Q9R8E3
- Pockets
- 14 · best druggability 0.74
Structure
x-ray diffraction · 2 distinct chains · 39% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta-lactam synthetase | protein | 480 | 39% helix, 21% strand | Q9R8E3 |
| B | Beta-lactam synthetase | protein | 490 | 38% helix, 19% strand | Q9R8E3 |
Pockets
14 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 658 | 0.74 | 0.81 | 53 | empty |
| 2 | 591 | 0.68 | 0.78 | 64 | empty |
| 3 | 489 | 0.67 | 0.78 | 59 | empty |
| 4 | 163 | 0.57 | 0.82 | 33 | empty |
| 5 | 108 | 0.45 | 0.79 | 26 | empty |
Interfaces
1 interface between chains.
- A–B · 1405 Ų buried · 21 hydrogen bonds · protein-protein
Compared structures
- 1M1Z · Beta-lactam synthetase apo enzyme · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9R8E3
- Elsewhere: RCSB PDB 1M1Z · PDBe 1M1Z · UniProt Q9R8E3
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