MolNFT v1 · #142048 · protein

M. smegmatis antimutator protein MUTT2 in complex with 5M-dcmp

5ZRI · Putative mutator protein MUTT2/NUDIX hydrolase: “M. smegmatis antimutator protein MUTT2 in complex with 5M-dcmp”. X-ray diffraction, 2 ligands (9L3, MG), 1 pocket (best druggability 0.43). MolNFT v1 #142048 on GenesisL1: 3D…

PDB: 5ZRI
Type: protein
Length: 126 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative mutator protein MUTT2/NUDIX hydrolase
UniProt: I7FJF7
Ligands: 9L3, MG
Pockets: 1 · best druggability 0.43

Structure

x-ray diffraction · 1 distinct chain · 21% helix, 38% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative mutator protein MUTT2/NUDIX hydrolase	protein	126	21% helix, 38% strand	I7FJF7

Ligands and binding sites

9L3 · [(2R,3S,5R)-5-(4-azanyl-5-methyl-pyrimidin-1-ium-1-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate · ligand · chains A
MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	102	0.43	0.78	25	9L3, MG

Compared structures

5ZRI · M. smegmatis antimutator protein MutT2 in complex with 5m-dCMP · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt I7FJF7
Elsewhere: RCSB PDB 5ZRI · PDBe 5ZRI · UniProt I7FJF7

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