MolNFT v1 · #142014 · protein
Crystal structure of penicillin-binding protein D2 from listeria monocytogenes in the cefuroxime bound form
5ZQE: “Crystal structure of penicillin-binding protein D2 from listeria monocytogenes in the cefuroxime bound form”. X-ray diffraction, 1 ligand (CES). MolNFT v1 #142014 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5ZQE
- Type
- protein
- Length
- 1,974 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8Y3M3
- Ligands
- CES
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, E, F, G, H | — | protein | 247 | — | Q8Y3M3 |
| C, D | — | protein | 246 | — | Q8Y3M3 |
Ligands and binding sites
- CES · 2-[carboxy-(2-furan-2-yl-2-methoxyimino-acetylamino)-methyl]-5-methyl-3,6-dihydro-2H-[1,3]thiazine-4-carboxylic acid · ligand · 8 copies · chains A, B, C, D, E, F, G, H
- GOL · Glycerol · additive · 16 copies · chains A, B, C, E, D, F, G, H
- PEG · Di(hydroxyethyl)ether · additive · chains F, G
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8Y3M3
- Elsewhere: RCSB PDB 5ZQE · PDBe 5ZQE · UniProt Q8Y3M3
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