MolNFT v1 · #141999 · protein
Solution structure of thioredoxin-like effector protein (TRX3) from edwardsiella piscicida
5ZPV · Thioredoxin (H-TYPE,TRX-H): “Solution structure of thioredoxin-like effector protein (TRX3) from edwardsiella piscicida”. Solution nmr, 3 pockets (best druggability 0.70). MolNFT v1 #141999 on GenesisL1: 3D structure, binding sites…
- PDB
- 5ZPV
- Type
- protein
- Length
- 106 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Thioredoxin (H-TYPE,TRX-H)
- UniProt
- D0Z9P5
- Pockets
- 3 · best druggability 0.70
Structure
solution nmr · 1 distinct chain · 25% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Thioredoxin (H-TYPE,TRX-H) | protein | 106 | 25% helix, 18% strand | D0Z9P5 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 77 | 0.70 | 0.94 | 23 | empty |
| 2 | 101 | 0.44 | 0.78 | 16 | empty |
| 3 | 69 | 0.39 | 0.79 | 13 | empty |
Compared structures
- 5ZPV · Solution Structure of Thioredoxin-Like Effector Protein (TRX3) from Edwardsiella piscicida · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D0Z9P5
- Elsewhere: RCSB PDB 5ZPV · PDBe 5ZPV · UniProt D0Z9P5
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