MolNFT v1 · #141979 · protein
Copper amine oxidase from arthrobacter globiformis anaerobically reduced by ethylamine at pH 6 at 283 K (3)
5ZPB · Phenylethylamine oxidase: “Copper amine oxidase from arthrobacter globiformis anaerobically reduced by ethylamine at pH 6 at 283 K (3)”. X-ray diffraction, 2 ligands (CU, NA), 17 pockets (best druggability 0.89). MolNFT v1 #141979…
- PDB
- 5ZPB
- Type
- protein
- Length
- 1,240 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phenylethylamine oxidase
- EC
- 1.4.3.21
- UniProt
- P46881
- Ligands
- CU, NA
- Pockets
- 17 · best druggability 0.89
Structure
x-ray diffraction · 1 distinct chain · 13% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Phenylethylamine oxidase (EC 1.4.3.21) | protein | 620 | 13% helix, 43% strand | P46881 |
Ligands and binding sites
- CU · Copper (II) ion · metal · 2 copies · chains A, B
- NA · Sodium ion · metal · 2 copies · chains A, B
- EDO · 1,2-ethanediol · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
17 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1167 | 0.89 | 0.90 | 134 | empty |
| 2 | 363 | 0.71 | 0.83 | 64 | empty |
| 3 | 60 | 0.69 | 0.97 | 25 | EDO |
| 4 | 325 | 0.66 | 0.81 | 35 | empty |
| 5 | 254 | 0.64 | 0.82 | 31 | empty |
Interfaces
1 interface between chains.
- A–B · 6933 Ų buried · 108 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide, 2 modified (disulfide, nonstandard).
Compared structures
- 5ZPB · Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by ethylamine at… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P46881
- Elsewhere: RCSB PDB 5ZPB · PDBe 5ZPB · UniProt P46881
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