MolNFT v1 · #141918 · protein
The crystal complex of immune receptor RGA5A_S of pia from rice (oryzae sativa) with rice blast (magnaporthe oryzae) effector protein AVR1-CO39
5ZNG · Nbs-lrr type protein: “The crystal complex of immune receptor RGA5A_S of pia from rice (oryzae sativa) with rice blast (magnaporthe…”. X-ray diffraction, 2 pockets (best druggability 0.30). MolNFT v1 #141918 on GenesisL1: 3D…
- PDB
- 5ZNG
- Type
- protein
- Length
- 141 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nbs-lrr type protein; AVR1-CO39
- UniProt
- F7J0N2, Q8J180
- Pockets
- 2 · best druggability 0.30
Structure
x-ray diffraction · 2 distinct chains · 17% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nbs-lrr type protein | protein | 79 | 30% helix, 38% strand | F7J0N2 |
| C | AVR1-CO39 | protein | 62 | 0% helix, 55% strand | Q8J180 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 53 | 0.30 | 0.76 | 18 | empty |
| 2 | 58 | 0.28 | 0.74 | 17 | empty |
Interfaces
1 interface between chains.
- A–C · 517 Ų buried · 9 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 5ZNG · The crystal complex of immune receptor RGA5A_S of Pia from rice (Oryzae sativa) with rice… · the same entry in another collection · chain A against A, TM-score 1.00
- F7J0N2 · AlphaFold monomer V2.0 prediction for disease resistance protein RGA5 (F7J0N2) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F7J0N2
- Every structure of UniProt Q8J180
- Elsewhere: RCSB PDB 5ZNG · PDBe 5ZNG · UniProt F7J0N2 · UniProt Q8J180
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