MolNFT v1 · #141884 · protein
A-ubiquitin like protein from the trypanosoma brucei
5ZMB · Ubiquintin-like protein: “A-ubiquitin like protein from the trypanosoma brucei”. Solution nmr, 2 pockets (best druggability 0.41). MolNFT v1 #141884 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5ZMB
- Type
- protein
- Length
- 81 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ubiquintin-like protein
- UniProt
- Q583M0
- Pockets
- 2 · best druggability 0.41
Structure
solution nmr · 1 distinct chain · 23% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ubiquintin-like protein | protein | 81 | 23% helix, 28% strand | Q583M0 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 60 | 0.41 | 0.81 | 16 | empty |
| 2 | 54 | 0.35 | 0.78 | 15 | empty |
Compared structures
- 5ZMB · A-ubiquitin like protein from the trypanosoma brucei · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q583M0
- Elsewhere: RCSB PDB 5ZMB · PDBe 5ZMB · UniProt Q583M0
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