MolNFT v1 · #141882 · protein
Crystal structure of hexacoordinated heme protein from anhydrobiotic tardigrade at pH 7
5ZM9 · Globin protein: “Crystal structure of hexacoordinated heme protein from anhydrobiotic tardigrade at pH 7”. X-ray diffraction, 2 ligands (HEM, CL), 1 pocket (best druggability 0.65). MolNFT v1 #141882 on GenesisL1: 3D structure…
- PDB
- 5ZM9
- Type
- protein
- Length
- 154 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Globin protein
- UniProt
- A0A1D1V896
- Ligands
- HEM, CL
- Pockets
- 1 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 79% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| D | Globin protein | protein | 154 | 79% helix, 0% strand | A0A1D1V896 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 146 | 0.65 | 0.86 | 21 | HEM |
Compared structures
- 5ZM9 · Crystal structure of hexacoordinated heme protein from anhydrobiotic tardigrade at pH 7 · the same entry in another collection · chain D against D, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1D1V896
- Elsewhere: RCSB PDB 5ZM9 · PDBe 5ZM9 · UniProt A0A1D1V896
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