MolNFT v1 · #141876 · protein
FE(II)/(ALPHA)KETOGLUTARATE-dependent dioxygenase anda with preandiloid B
5ZM3: “FE(II)/(ALPHA)KETOGLUTARATE-dependent dioxygenase anda with preandiloid B”. X-ray diffraction, 3 ligands (AKG, 9FR, FE). MolNFT v1 #141876 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5ZM3
- Type
- protein
- Length
- 1,142 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A097ZPD5
- Ligands
- AKG, 9FR, FE
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, D | — | protein | 285 | — | A0A097ZPD5 |
| B | — | protein | 286 | — | A0A097ZPD5 |
| C | — | protein | 286 | — | A0A097ZPD5 |
Ligands and binding sites
- AKG · 2-oxoglutaric acid · ligand · 4 copies · chains A, B, C, D
- 9FR · (6as,8ar,12as,12br,13ar)-5,6A,9,9,12A,13A-hexamethyl-7, 8,8A,9,11,12,12A,12B,13,13A-decahydro-3H-benzo[a]furo[3,4-j]xanthene-3,4,10(1h,6ah)-trione · ligand · 4 copies · chains A, B, C, D
- FE · Fe (III) ion · metal · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5ZM3 · Fe(II)/(alpha)ketoglutarate-dependent dioxygenase AndA with preandiloid B · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A097ZPD5
- Elsewhere: RCSB PDB 5ZM3 · PDBe 5ZM3 · UniProt A0A097ZPD5
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