MolNFT v1 · #141854 · protein
Engineered chitinase, smchiab-fysfv
5ZL9 · Chitinase ab: “Engineered chitinase, smchiab-fysfv”. X-ray diffraction, 3 pockets (best druggability 0.72). MolNFT v1 #141854 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5ZL9
- Type
- protein
- Length
- 594 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chitinase ab
- Pockets
- 3 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 26% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Chitinase ab | protein | 594 | 26% helix, 28% strand | — |
Ligands and binding sites
- GOL · Glycerol · additive · 7 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 584 | 0.72 | 0.80 | 58 | GOL |
| 2 | 63 | 0.41 | 0.81 | 15 | empty |
| 3 | 60 | 0.30 | 0.75 | 15 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 5ZL9 · Engineered chitinase, SmChiAB-FYSFV · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5ZL9 · PDBe 5ZL9
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