MolNFT v1 · #141851 · protein

Crystal structure of dfa-iiiase from arthrobacter chlorophenolicus A6 wihout its lid in complex with GF2

5ZL4: “Crystal structure of dfa-iiiase from arthrobacter chlorophenolicus A6 wihout its lid in complex with GF2”. X-ray diffraction, 2 ligands (FRU, GLC), 2 pockets (best druggability 0.53). MolNFT v1 #141851 on GenesisL1: 3D structure…

PDB: 5ZL4
Type: protein
Length: 416 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Dfa-iiiase
EC: 4.2.2.18
UniProt: B8HDZ1
Ligands: FRU, GLC
Pockets: 2 · best druggability 0.53

Structure

x-ray diffraction · 1 distinct chain · 11% helix, 40% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Dfa-iiiase (EC 4.2.2.18)	protein	416	11% helix, 40% strand	B8HDZ1

Ligands and binding sites

FRU · beta-D-fructofuranose · sugar · 2 copies · chains A
GLC · alpha-D-glucopyranose · sugar · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	122	0.53	0.82	20	empty
2	76	0.36	0.76	16	FRU

Compared structures

5ZL4 · Crystal structure of DFA-IIIase from Arthrobacter chlorophenolicus A6 wihout its lid in… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B8HDZ1
Elsewhere: RCSB PDB 5ZL4 · PDBe 5ZL4 · UniProt B8HDZ1

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