MolNFT v1 · #141837 · protein

Structure of N-acetylmannosamine-6-phosphate 2-epimerase from fusobacterium nucleatum

5ZKN · Putative N-acetylmannosamine-6-phosphate 2-epimerase: “Structure of N-acetylmannosamine-6-phosphate 2-epimerase from fusobacterium nucleatum”. X-ray diffraction, 1 ligand (CL), 1 pocket (best druggability 0.57). MolNFT v1 #141837 on…

PDB: 5ZKN
Type: protein
Length: 225 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative N-acetylmannosamine-6-phosphate 2-epimerase
EC: 5.1.3.9
UniProt: Q8RDN5
Ligands: CL
Pockets: 1 · best druggability 0.57

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)	protein	225	44% helix, 16% strand	Q8RDN5

Ligands and binding sites

CL · Chloride ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	193	0.57	0.80	23	CL

Compared structures

5ZKN · Structure of N-acetylmannosamine-6-phosphate 2-epimerase from Fusobacterium nucleatum · the same entry in another collection · chain A against A, TM-score 1.00
Q8RDN5 · AlphaFold monomer V2.0 prediction for putative N-acetylmannosamine-6-phosphate… · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8RDN5
Elsewhere: RCSB PDB 5ZKN · PDBe 5ZKN · UniProt Q8RDN5

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