MolNFT v1 · #141835 · protein + DNA

Crystal structure of streptococcus pneumoniae SP_0782 (residues 7-79) in complex with single-stranded DNA DT12

5ZKL: “Crystal structure of streptococcus pneumoniae SP_0782 (residues 7-79) in complex with single-stranded DNA DT12”. X-ray diffraction. MolNFT v1 #141835 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5ZKL
Type: protein + DNA
Length: 70 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: SP_0782; DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3')
UniProt: Q8DQG2

Structure

x-ray diffraction · 2 distinct chains · 15% helix, 53% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	SP_0782	protein	66	15% helix, 53% strand	Q8DQG2
B	DNA (5'-D(TPTPTPTPTPTPTPTPTPT)-3')	dna	4	—	—

Interfaces

1 interface between chains.

A–B · 452 Å² buried · 4 hydrogen bonds · protein-nucleic

Compared structures

5ZKL · Crystal structure of Streptococcus pneumoniae SP_0782 (residues 7-79) in complex with… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8DQG2
Elsewhere: RCSB PDB 5ZKL · PDBe 5ZKL · UniProt Q8DQG2

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