MolNFT v1 · #141830 · protein
Crystal structure of C-terminal domain of plasmodium vivax P43
5ZKG · Aminoacyl-tRNA synthetase-interacting multifunctional…: “Crystal structure of C-terminal domain of plasmodium vivax P43”. X-ray diffraction, 4 pockets (best druggability 0.54). MolNFT v1 #141830 on GenesisL1: 3D structure, binding…
- PDB
- 5ZKG
- Type
- protein
- Length
- 330 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Aminoacyl-tRNA synthetase-interacting multifunctional protein P43
- UniProt
- A0A1G4HHT8
- Pockets
- 4 · best druggability 0.54
Structure
x-ray diffraction · 1 distinct chain · 10% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Aminoacyl-tRNA synthetase-interacting multifunctional protein P43 | protein | 165 | 10% helix, 36% strand | A0A1G4HHT8 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 324 | 0.54 | 0.74 | 45 | empty |
| 2 | 59 | 0.46 | 0.83 | 21 | empty |
| 3 | 153 | 0.44 | 0.75 | 27 | empty |
| 4 | 57 | 0.31 | 0.76 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 345 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 5ZKG · Crystal Structure of C-terminal Domain of Plasmodium vivax p43 · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1G4HHT8
- Elsewhere: RCSB PDB 5ZKG · PDBe 5ZKG · UniProt A0A1G4HHT8
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