MolNFT v1 · #141779 · protein
Crystal structure of human entervirus D68 rdrp
5ZIU: “Crystal structure of human entervirus D68 rdrp”. X-ray diffraction, 4 pockets (best druggability 0.57). MolNFT v1 #141779 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5ZIU
- Type
- protein
- Length
- 457 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Rdrp
- UniProt
- I6TFG7
- Pockets
- 4 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Rdrp | protein | 457 | 42% helix, 16% strand | I6TFG7 |
Ligands and binding sites
- GOL · Glycerol · additive · 3 copies · chains A
- PEG · Di(hydroxyethyl)ether · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 352 | 0.57 | 0.76 | 35 | empty |
| 2 | 264 | 0.54 | 0.76 | 31 | PEG |
| 3 | 141 | 0.45 | 0.76 | 24 | empty |
| 4 | 163 | 0.40 | 0.73 | 23 | GOL |
Compared structures
- 5ZIU · Crystal structure of human Entervirus D68 RdRp · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt I6TFG7
- Elsewhere: RCSB PDB 5ZIU · PDBe 5ZIU · UniProt I6TFG7
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