MolNFT v1 · #141752 · protein
Crystal structure of the APURINIC/APYRIMIDINIC endonuclease IV from mycobacterium tuberculosis
5ZHZ · Probable endonuclease 4: “Crystal structure of the APURINIC/APYRIMIDINIC endonuclease IV from mycobacterium tuberculosis”. X-ray diffraction, 2 ligands (ZN, SO4), 1 pocket (best druggability 0.36). MolNFT v1 #141752 on GenesisL1: 3D…
- PDB
- 5ZHZ
- Type
- protein
- Length
- 252 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable endonuclease 4
- EC
- 3.1.21.2
- UniProt
- P9WQ13
- Ligands
- ZN, SO4
- Pockets
- 1 · best druggability 0.36
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable endonuclease 4 (EC 3.1.21.2) | protein | 252 | 42% helix, 15% strand | P9WQ13 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 100 | 0.36 | 0.75 | 23 | SO4 |
Compared structures
- 5ZHZ · Crystal structure of the apurinic/apyrimidinic endonuclease IV from Mycobacterium… · the same entry in another collection · chain A against A, TM-score 1.00
- P9WQ13 · AlphaFold monomer V2.0 prediction for probable endonuclease 4 (P9WQ13) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P9WQ13
- Elsewhere: RCSB PDB 5ZHZ · PDBe 5ZHZ · UniProt P9WQ13
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