MolNFT v1 · #141729 · protein

Structure of cellobiose 2-epimerase from bacillus thermoamylovorans B4167

5ZHB: “Structure of cellobiose 2-epimerase from bacillus thermoamylovorans B4167”. X-ray diffraction, 7 pockets (best druggability 0.57). MolNFT v1 #141729 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5ZHB
Type: protein
Length: 759 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cellobiose 2-epimerase
EC: 5.1.3.11
UniProt: A0A0D0GHZ5
Pockets: 7 · best druggability 0.57

Structure

x-ray diffraction · 2 distinct chains · 55% helix, 13% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cellobiose 2-epimerase (EC 5.1.3.11)	protein	380	55% helix, 14% strand	A0A0D0GHZ5
B	Cellobiose 2-epimerase (EC 5.1.3.11)	protein	379	55% helix, 13% strand	A0A0D0GHZ5

Ligands and binding sites

EDO · 1,2-ethanediol · additive · 12 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

7 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	76	0.57	0.88	20	EDO
2	316	0.56	0.76	38	EDO
3	71	0.54	0.87	21	EDO
4	233	0.52	0.76	25	EDO
5	125	0.45	0.77	19	empty

Interfaces

1 interface between chains.

A–B · 322 Å² buried · 7 hydrogen bonds · protein-protein

Compared structures

5ZHB · Structure of Cellobiose 2-Epimerase from Bacillus thermoamylovorans B4167 · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0D0GHZ5
Elsewhere: RCSB PDB 5ZHB · PDBe 5ZHB · UniProt A0A0D0GHZ5

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