MolNFT v1 · #141676 · protein

Crystal structure of pilt-4, a retraction ATPase motor of type IV pilus , from geobacter sulfurreducens

5ZFQ · Twitching motility pilus retraction protein: “Crystal structure of pilt-4, a retraction ATPase motor of type IV pilus , from geobacter sulfurreducens”. X-ray diffraction, 8 pockets (best druggability 0.80). MolNFT v1 #141676 on…

PDB: 5ZFQ
Type: protein
Length: 720 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Twitching motility pilus retraction protein
UniProt: Q74D27
Pockets: 8 · best druggability 0.80

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Twitching motility pilus retraction protein	protein	360	39% helix, 25% strand	Q74D27

Pockets

8 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1101	0.80	0.81	95	empty
2	220	0.60	0.81	36	empty
3	224	0.56	0.79	34	empty
4	196	0.56	0.80	27	empty
5	260	0.52	0.75	33	empty

Interfaces

1 interface between chains.

A–B · 1901 Å² buried · 41 hydrogen bonds · protein-protein

Compared structures

5ZFQ · Crystal structure of PilT-4, a retraction ATPase motor of Type IV pilus , from Geobacter… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q74D27
Elsewhere: RCSB PDB 5ZFQ · PDBe 5ZFQ · UniProt Q74D27

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