MolNFT v1 · #141642 · RNA
Crystal structure of the bacterial A1408ME1A-mutant ribosomal decoding site
5ZEG · RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)…: “Crystal structure of the bacterial A1408ME1A-mutant ribosomal decoding site”. X-ray diffraction, 1 pocket (best druggability 0.70). MolNFT v1 #141642 on GenesisL1: 3D structure, binding sites…
- PDB
- 5ZEG
- Type
- RNA
- Length
- 69 nucleotides
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA) P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')
- Pockets
- 1 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA) P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') | rna | 23 | — | — |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1097 | 0.70 | 0.75 | 41 | empty |
Interfaces
3 interfaces between chains.
- A–B · 1082 Ų buried · 101 hydrogen bonds · nucleic-nucleic
- A–C · 156 Ų buried · 11 hydrogen bonds · nucleic-nucleic
- B–C · 43 Ų buried · 0 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 3 modified (nucleotide modification).
Compared structures
- 5ZEG · Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5ZEG · PDBe 5ZEG
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