MolNFT v1 · #141622 · protein
Crystal structure analysis of ttqrs in co-crystallised with ATP
5ZDO · Glutamine-tRNA ligase: “Crystal structure analysis of ttqrs in co-crystallised with ATP”. X-ray diffraction, 1 ligand (CL), 2 pockets (best druggability 0.73). MolNFT v1 #141622 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 5ZDO
- Type
- protein
- Length
- 537 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glutamine-tRNA ligase
- EC
- 6.1.1.18
- UniProt
- Q5SKU4
- Ligands
- CL
- Pockets
- 2 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 28% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glutamine-tRNA ligase (EC 6.1.1.18) | protein | 537 | 28% helix, 26% strand | Q5SKU4 |
Ligands and binding sites
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 62 | 0.73 | 0.98 | 16 | empty |
| 2 | 336 | 0.63 | 0.79 | 34 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 5ZDO · Crystal Structure Analysis of TtQRS in co-crystallised with ATP · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5SKU4
- Elsewhere: RCSB PDB 5ZDO · PDBe 5ZDO · UniProt Q5SKU4
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