MolNFT v1 · #141604 · protein
Structure of T20/N39
5ZCX · Envelope glycoprotein: “Structure of T20/N39”. X-ray diffraction, 1 ligand (ACE), 1 pocket (best druggability 0.47). MolNFT v1 #141604 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5ZCX
- Type
- protein
- Length
- 181 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Envelope glycoprotein; Envelope glycoprotein GP160
- UniProt
- C4MJC7, Q6TAQ3
- Ligands
- ACE
- Pockets
- 1 · best druggability 0.47
Structure
x-ray diffraction · 6 distinct chains · 91% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Envelope glycoprotein | protein | 31 | 94% helix, 0% strand | C4MJC7 |
| B | Envelope glycoprotein | protein | 27 | 93% helix, 0% strand | C4MJC7 |
| W | Envelope glycoprotein GP160 | protein | 33 | 91% helix, 0% strand | Q6TAQ3 |
| P | Envelope glycoprotein GP160 | protein | 29 | 90% helix, 0% strand | Q6TAQ3 |
| Q | Envelope glycoprotein GP160 | protein | 32 | 91% helix, 0% strand | Q6TAQ3 |
| C | Envelope glycoprotein | protein | 29 | 90% helix, 0% strand | C4MJC7 |
Ligands and binding sites
- ACE · Acetyl group · ligand · 2 copies · chains W, Q
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 158 | 0.47 | 0.76 | 16 | empty |
Interfaces
9 interfaces between chains.
- A–W · 778 Ų buried · 4 hydrogen bonds · protein-protein
- Q–C · 759 Ų buried · 12 hydrogen bonds · protein-protein
- B–P · 672 Ų buried · 5 hydrogen bonds · protein-protein
- A–C · 573 Ų buried · 4 hydrogen bonds · protein-protein
- W–C · 561 Ų buried · 4 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 covalent (covalent ligand).
Compared structures
- 5ZCX · Structure of T20/N39 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C4MJC7
- Every structure of UniProt Q6TAQ3
- Elsewhere: RCSB PDB 5ZCX · PDBe 5ZCX · UniProt C4MJC7 · UniProt Q6TAQ3
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