MolNFT v1 · #141578 · protein
Crystal structure of RNF13 ring domain
5ZC4 · E3 ubiquitin-protein ligase RNF13: “Crystal structure of RNF13 ring domain”. X-ray diffraction, 1 ligand (ZN). MolNFT v1 #141578 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5ZC4
- Type
- protein
- Length
- 145 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- E3 ubiquitin-protein ligase RNF13
- EC
- 2.3.2.27
- UniProt
- O43567
- Ligands
- ZN
Structure
x-ray diffraction · 2 distinct chains · 20% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | E3 ubiquitin-protein ligase RNF13 (EC 2.3.2.27) | protein | 73 | 19% helix, 19% strand | O43567 |
| D | E3 ubiquitin-protein ligase RNF13 (EC 2.3.2.27) | protein | 72 | 21% helix, 19% strand | O43567 |
Ligands and binding sites
- ZN · Zinc ion · metal · 4 copies · chains A, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–D · 546 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O43567
- Elsewhere: RCSB PDB 5ZC4 · PDBe 5ZC4 · UniProt O43567
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