MolNFT v1 · #141577 · protein
The crystal structure of PCRXLR12
5ZC3 · Rxlr effector: “The crystal structure of PCRXLR12”. X-ray diffraction, 6 pockets (best druggability 0.64). MolNFT v1 #141577 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5ZC3
- Type
- protein
- Length
- 832 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Rxlr effector
- Pockets
- 6 · best druggability 0.64
Structure
x-ray diffraction · 2 distinct chains · 69% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Rxlr effector | protein | 411 | 69% helix, 0% strand | — |
| A | Rxlr effector | protein | 421 | 69% helix, 0% strand | — |
Pockets
6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 628 | 0.64 | 0.75 | 51 | empty |
| 2 | 246 | 0.50 | 0.75 | 36 | empty |
| 3 | 118 | 0.40 | 0.75 | 18 | empty |
| 4 | 94 | 0.34 | 0.74 | 19 | empty |
| 5 | 60 | 0.31 | 0.75 | 11 | empty |
Interfaces
1 interface between chains.
- B–A · 840 Ų buried · 9 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 14 modified (engineered).
Compared structures
- 5ZC3 · The Crystal Structure of PcRxLR12 · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5ZC3 · PDBe 5ZC3
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