MolNFT v1 · #141550 · protein

Crystal structure of RTT109 from aspergillus fumigatus

5ZB9 · DNA damage response protein RTT109, putative: “Crystal structure of RTT109 from aspergillus fumigatus”. X-ray diffraction, 7 pockets (best druggability 0.74). MolNFT v1 #141550 on GenesisL1: 3D structure, binding sites and pockets…

PDB: 5ZB9
Type: protein
Length: 402 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA damage response protein RTT109, putative
UniProt: Q4WUS9
Pockets: 7 · best druggability 0.74

Structure

x-ray diffraction · 1 distinct chain · 30% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	DNA damage response protein RTT109, putative	protein	402	30% helix, 21% strand	Q4WUS9

Ligands and binding sites

GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	76	0.74	0.97	24	empty
2	300	0.67	0.82	41	GOL
3	174	0.45	0.75	26	empty
4	76	0.38	0.78	19	empty
5	68	0.36	0.77	18	empty

Modifications

Observed in the structure: 1 modified (acetylation).

Compared structures

5ZB9 · Crystal structure of Rtt109 from Aspergillus fumigatus · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q4WUS9
Elsewhere: RCSB PDB 5ZB9 · PDBe 5ZB9 · UniProt Q4WUS9

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