MolNFT v1 · #141542 · protein

Monomeric crystal structure of ORF57 from kshv

5ZB1: “Monomeric crystal structure of ORF57 from kshv”. X-ray diffraction, 1 ligand (ZN), 3 pockets (best druggability 0.53). MolNFT v1 #141542 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5ZB1
Type: protein
Length: 256 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: ORF57
UniProt: A0A0N9SHG8
Ligands: ZN
Pockets: 3 · best druggability 0.53

Structure

x-ray diffraction · 1 distinct chain · 63% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	ORF57	protein	256	63% helix, 2% strand	A0A0N9SHG8

Ligands and binding sites

ZN · Zinc ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	338	0.53	0.73	33	empty
2	117	0.42	0.76	20	empty
3	78	0.39	0.78	13	empty

Compared structures

5ZB1 · Monomeric crystal structure of orf57 from KSHV · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0N9SHG8
Elsewhere: RCSB PDB 5ZB1 · PDBe 5ZB1 · UniProt A0A0N9SHG8

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