MolNFT v1 · #141502 · protein

Bacterial gyrb ATPase domain in complex with a chemical fragment

5Z9L: “Bacterial gyrb ATPase domain in complex with a chemical fragment”. X-ray diffraction, 3 ligands (8H8, AX7, PO4). MolNFT v1 #141502 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5Z9L
Type: protein
Length: 371 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P0AES6
Ligands: 8H8, AX7, PO4

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	185	—	P0AES6
B	—	protein	186	—	P0AES6

Ligands and binding sites

8H8 · 2-fluoro-4-hydroxybenzonitrile · ligand · 2 copies · chains A, B
AX7 · 1H-benzimidazol-2-amine · ligand · chains A, B
PO4 · Phosphate ion · ion · 4 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5Z9L · Bacterial GyrB ATPase domain in complex with a chemical fragment · the same entry in another collection · chain A against A, TM-score 1.00
P0AES6 · AlphaFold monomer V2.0 prediction for DNA gyrase subunit B (P0AES6) · a predicted model of the same protein · chain B against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0AES6
Elsewhere: RCSB PDB 5Z9L · PDBe 5Z9L · UniProt P0AES6

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