MolNFT v1 · #141473 · protein
Structural of start superfamily protein MSMEG_0129 from mycobacterium smegmatis
5Z8O · CYCLASE/DEHYDRASE: “Structural of start superfamily protein MSMEG_0129 from mycobacterium smegmatis”. X-ray diffraction, 3 pockets (best druggability 0.79). MolNFT v1 #141473 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5Z8O
- Type
- protein
- Length
- 291 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- CYCLASE/DEHYDRASE
- UniProt
- I7FVL6
- Pockets
- 3 · best druggability 0.79
Structure
x-ray diffraction · 2 distinct chains · 29% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | CYCLASE/DEHYDRASE | protein | 145 | 29% helix, 47% strand | I7FVL6 |
| B | CYCLASE/DEHYDRASE | protein | 146 | 29% helix, 47% strand | I7FVL6 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 243 | 0.79 | 0.92 | 38 | empty |
| 2 | 523 | 0.77 | 0.84 | 50 | empty |
| 3 | 52 | 0.25 | 0.73 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 487 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 5Z8O · Structural of START superfamily protein MSMEG_0129 from Mycobacterium smegmatis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt I7FVL6
- Elsewhere: RCSB PDB 5Z8O · PDBe 5Z8O · UniProt I7FVL6
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