MolNFT v1 · #141464 · protein

Truncated N-acetylglucosaminyl transferase kfia from E. COLI K5 strain apo form

5Z8B · Kfia protein: “Truncated N-acetylglucosaminyl transferase kfia from E. COLI K5 strain apo form”. X-ray diffraction, 3 pockets (best druggability 0.69). MolNFT v1 #141464 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5Z8B
Type: protein
Length: 413 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Kfia protein
UniProt: Q47332
Pockets: 3 · best druggability 0.69

Structure

x-ray diffraction · 2 distinct chains · 26% helix, 29% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Kfia protein	protein	209	26% helix, 29% strand	Q47332
B	Kfia protein	protein	204	27% helix, 28% strand	Q47332

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	770	0.69	0.76	58	empty
2	149	0.45	0.76	27	empty
3	108	0.36	0.74	19	empty

Interfaces

1 interface between chains.

A–B · 325 Å² buried · 3 hydrogen bonds · protein-protein

Compared structures

5Z8B · Truncated N-acetylglucosaminyl transferase KfiA from E. coli K5 strain apo form · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q47332
Elsewhere: RCSB PDB 5Z8B · PDBe 5Z8B · UniProt Q47332

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