MolNFT v1 · #141451 · protein
Crystal structure of striga hermonthica HTL7 (SHHTL7)
5Z7Y · Hyposensitive to light 7: “Crystal structure of striga hermonthica HTL7 (SHHTL7)”. X-ray diffraction, 1 ligand (MG), 13 pockets (best druggability 0.78). MolNFT v1 #141451 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5Z7Y
- Type
- protein
- Length
- 1,070 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hyposensitive to light 7
- UniProt
- A0A0M3PNA2
- Ligands
- MG
- Pockets
- 13 · best druggability 0.78
Structure
x-ray diffraction · 2 distinct chains · 46% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, D | Hyposensitive to light 7 | protein | 267 | 45% helix, 17% strand | A0A0M3PNA2 |
| C | Hyposensitive to light 7 | protein | 269 | 46% helix, 17% strand | A0A0M3PNA2 |
Ligands and binding sites
- MG · Magnesium ion · metal · 5 copies · chains A, B, C, D
- DIO · 1,4-diethylene dioxide · additive · 2 copies · chains A, D
- EDO · 1,2-ethanediol · additive · 2 copies · chains C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
13 pockets found on a 1 Å grid, 11 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 263 | 0.78 | 0.89 | 28 | EDO |
| 2 | 258 | 0.76 | 0.88 | 30 | empty |
| 3 | 251 | 0.75 | 0.88 | 29 | empty |
| 4 | 423 | 0.74 | 0.84 | 41 | empty |
| 5 | 69 | 0.74 | 0.98 | 20 | MG |
Interfaces
5 interfaces between chains.
- B–D · 548 Ų buried · 5 hydrogen bonds · protein-protein
- B–C · 537 Ų buried · 8 hydrogen bonds · protein-protein
- C–D · 409 Ų buried · 11 hydrogen bonds · protein-protein
- A–B · 337 Ų buried · 2 hydrogen bonds · protein-protein
- A–C · 298 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 5Z7Y · Crystal structure of Striga hermonthica HTL7 (ShHTL7) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0M3PNA2
- Elsewhere: RCSB PDB 5Z7Y · PDBe 5Z7Y · UniProt A0A0M3PNA2
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