MolNFT v1 · #141440 · protein + DNA
Caulobacter crescentus gcra DNA-binding DOMAIN(DBD)IN complex with unmethylated dsdna
5Z7I · Cell cycle regulatory protein gcra: “Caulobacter crescentus gcra DNA-binding DOMAIN(DBD)IN complex with unmethylated dsdna”. X-ray diffraction. MolNFT v1 #141440 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5Z7I
- Type
- protein + DNA
- Length
- 156 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cell cycle regulatory protein gcra; DNA (5'-D(*CP*CP*CP*TP*GP*AP*TP*TP*CP*GP*C*)-3'); DNA…
- UniProt
- A0A0H3C9J4
Structure
x-ray diffraction · 3 distinct chains · 69% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Cell cycle regulatory protein gcra | protein | 45 | 69% helix, 0% strand | A0A0H3C9J4 |
| D | DNA (5'-D(*CP*CP*CP*TP*GP*AP*TP*TP*CP*GP*C*)-3') | dna | 11 | — | — |
| E | DNA (5'-D(P*GP*CP*GP*AP*AP*TP*CP*AP*GP*G)-3') | dna | 10 | — | — |
Ligands and binding sites
- BU3 · (R,R)-2,3-butanediol · additive · chains D, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
7 interfaces between chains.
- D–E · 475 Ų buried · 41 hydrogen bonds · nucleic-nucleic
- A–D · 355 Ų buried · 7 hydrogen bonds · protein-nucleic
- A–E · 336 Ų buried · 9 hydrogen bonds · protein-nucleic
- C–D · 273 Ų buried · 6 hydrogen bonds · protein-nucleic
- A–C · 268 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 5Z7I · Caulobacter crescentus GcrA DNA-binding domain(DBD)in complex with unmethylated dsDNA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0H3C9J4
- Elsewhere: RCSB PDB 5Z7I · PDBe 5Z7I · UniProt A0A0H3C9J4
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