MolNFT v1 · #141419 · protein

Crystal structure of a substrate-binding protein from rhodothermus marinus

5Z6V · ABC-type uncharacterized transport system periplasmic…: “Crystal structure of a substrate-binding protein from rhodothermus marinus”. X-ray diffraction, 1 pocket (best druggability 0.41). MolNFT v1 #141419 on GenesisL1: 3D…

PDB: 5Z6V
Type: protein
Length: 158 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: ABC-type uncharacterized transport system periplasmic component-like protein
UniProt: D0MDR1
Pockets: 1 · best druggability 0.41

Structure

x-ray diffraction · 1 distinct chain · 46% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	ABC-type uncharacterized transport system periplasmic component-like protein	protein	158	46% helix, 21% strand	D0MDR1

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	118	0.41	0.76	26	empty

Modifications

Observed in the structure: 3 modified (engineered).

Compared structures

5Z6V · Crystal structure of a substrate-binding protein from Rhodothermus marinus · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D0MDR1
Elsewhere: RCSB PDB 5Z6V · PDBe 5Z6V · UniProt D0MDR1

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