MolNFT v1 · #141398 · protein

Structure of the recombination mediator protein recf in recfor pathway

5Z67 · DNA replication and repair protein recf: “Structure of the recombination mediator protein recf in recfor pathway”. X-ray diffraction, 4 pockets (best druggability 0.67). MolNFT v1 #141398 on GenesisL1: 3D structure, binding sites…

PDB: 5Z67
Type: protein
Length: 367 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA replication and repair protein recf
UniProt: Q8RDL3
Pockets: 4 · best druggability 0.67

Structure

x-ray diffraction · 1 distinct chain · 46% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	DNA replication and repair protein recf	protein	367	46% helix, 23% strand	Q8RDL3

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	191	0.67	0.86	34	empty
2	85	0.56	0.86	18	empty
3	116	0.41	0.75	15	empty
4	55	0.26	0.73	14	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

5Z67 · Structure of the recombination mediator protein RecF in RecFOR pathway · the same entry in another collection · chain A against A, TM-score 1.00
Q8RDL3 · AlphaFold monomer V2.0 prediction for DNA replication and repair protein recf (Q8RDL3) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8RDL3
Elsewhere: RCSB PDB 5Z67 · PDBe 5Z67 · UniProt Q8RDL3

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