MolNFT v1 · #141363 · protein
Crystal structure of pacysb ntd domain with space group C2
5Z4Z · Transcriptional regulator cysb: “Crystal structure of pacysb ntd domain with space group C2”. X-ray diffraction, 1 ligand (SO4), 4 pockets (best druggability 0.67). MolNFT v1 #141363 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5Z4Z
- Type
- protein
- Length
- 266 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Transcriptional regulator cysb
- UniProt
- A0A2C6M5K9
- Ligands
- SO4
- Pockets
- 4 · best druggability 0.67
Structure
x-ray diffraction · 3 distinct chains · 69% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Transcriptional regulator cysb | protein | 88 | 68% helix, 8% strand | A0A2C6M5K9 |
| B | Transcriptional regulator cysb | protein | 90 | 70% helix, 8% strand | A0A2C6M5K9 |
| C | Transcriptional regulator cysb | protein | 88 | 68% helix, 8% strand | A0A2C6M5K9 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 285 | 0.67 | 0.82 | 28 | empty |
| 2 | 93 | 0.41 | 0.78 | 15 | empty |
| 3 | 100 | 0.39 | 0.75 | 15 | empty |
| 4 | 68 | 0.29 | 0.73 | 12 | empty |
Interfaces
3 interfaces between chains.
- A–B · 1124 Ų buried · 1 hydrogen bond · protein-protein
- A–C · 392 Ų buried · 5 hydrogen bonds · protein-protein
- B–C · 195 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 5Z4Z · Crystal structure of PaCysB NTD domain with space group C2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2C6M5K9
- Elsewhere: RCSB PDB 5Z4Z · PDBe 5Z4Z · UniProt A0A2C6M5K9
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.