MolNFT v1 · #141355 · protein

Structure of TAILORD343A with bound UTP and mg

5Z4M · Terminal uridylyltransferase tailor: “Structure of TAILORD343A with bound UTP and mg”. X-ray diffraction, 2 ligands (UTP, MG), 1 pocket (best druggability 0.69). MolNFT v1 #141355 on GenesisL1: 3D structure, binding sites and…

PDB: 5Z4M
Type: protein
Length: 350 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Terminal uridylyltransferase tailor
EC: 2.7.7.52
UniProt: Q9VI58
Ligands: UTP, MG
Pockets: 1 · best druggability 0.69

Structure

x-ray diffraction · 1 distinct chain · 45% helix, 12% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Terminal uridylyltransferase tailor (EC 2.7.7.52)	protein	350	45% helix, 12% strand	Q9VI58

Ligands and binding sites

UTP · Uridine 5'-triphosphate · ligand · 2 copies · chains A
MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	497	0.69	0.80	37	UTP, MG

Compared structures

5Z4M · Structure of TailorD343A with bound UTP and Mg · the same entry in another collection · chain A against A, TM-score 1.00
Q9VI58 · AlphaFold monomer V2.0 prediction for terminal uridylyltransferase tailor (Q9VI58) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9VI58
Elsewhere: RCSB PDB 5Z4M · PDBe 5Z4M · UniProt Q9VI58

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