MolNFT v1 · #141324 · protein
Crystal structure of abrin a chain (recombinant) in complex with nicotinamide at 1.7 ångströms
5Z3J · Abrin a-chain: “Crystal structure of abrin a chain (recombinant) in complex with nicotinamide at 1.7 ångströms”. X-ray diffraction, 1 ligand (NCA), 1 pocket (best druggability 0.41). MolNFT v1 #141324 on GenesisL1: 3D structure…
- PDB
- 5Z3J
- Type
- protein
- Length
- 246 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Abrin a-chain
- UniProt
- Q7DM12
- Ligands
- NCA
- Pockets
- 1 · best druggability 0.41
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Abrin a-chain | protein | 246 | 43% helix, 26% strand | Q7DM12 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 67 | 0.41 | 0.80 | 17 | NCA |
Compared structures
- 5Z3J · Crystal Structure of Abrin A chain (Recombinant) in complex with Nicotinamide at 1.7… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7DM12
- Elsewhere: RCSB PDB 5Z3J · PDBe 5Z3J · UniProt Q7DM12
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.