MolNFT v1 · #141291 · protein
Structure of S38A mutant metal-free periplasmic metal binding protein from candidatus liberibacter asiaticus
5Z2J · Periplasmic solute binding protein: “Structure of S38A mutant metal-free periplasmic metal binding protein from candidatus liberibacter asiaticus”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.32). MolNFT v1…
- PDB
- 5Z2J
- Type
- protein
- Length
- 270 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Periplasmic solute binding protein
- UniProt
- C6XF58
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.32
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Periplasmic solute binding protein | protein | 270 | 44% helix, 15% strand | C6XF58 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 3 copies · chains A
- ACT · Acetate ion · additive · 8 copies · chains A
- GOL · Glycerol · additive · 7 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 74 | 0.32 | 0.74 | 16 | empty |
Compared structures
- 5Z2J · structure of S38A mutant metal-free periplasmic metal binding protein from candidatus… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C6XF58
- Elsewhere: RCSB PDB 5Z2J · PDBe 5Z2J · UniProt C6XF58
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