MolNFT v1 · #141289 · protein

Structure of dictyostelium discoideum mitochondrial calcium uniporter N-terminal DOMAIN(DDMCU-ntd)

5Z2H: “Structure of dictyostelium discoideum mitochondrial calcium uniporter N-terminal DOMAIN(DDMCU-ntd)”. X-ray diffraction, 3 pockets (best druggability 0.60). MolNFT v1 #141289 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 5Z2H
Type: protein
Length: 182 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Dictyostelium discoideum mitochondrial calcium uniporter
UniProt: Q54LT0
Pockets: 3 · best druggability 0.60

Structure

x-ray diffraction · 1 distinct chain · 64% helix, 9% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Dictyostelium discoideum mitochondrial calcium uniporter	protein	91	64% helix, 9% strand	Q54LT0

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	339	0.60	0.77	29	empty
2	88	0.35	0.75	15	empty
3	75	0.33	0.75	13	empty

Interfaces

1 interface between chains.

A–B · 1314 Å² buried · 19 hydrogen bonds · protein-protein

Compared structures

5Z2H · Structure of Dictyostelium discoideum mitochondrial calcium uniporter N-terminal… · the same entry in another collection · chain A against A, TM-score 1.00
Q54LT0 · AlphaFold monomer V2.0 prediction for calcium uniporter protein, mitochondrial (Q54LT0) · a predicted model of the same protein · chain A against A, TM-score 0.91

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q54LT0
Elsewhere: RCSB PDB 5Z2H · PDBe 5Z2H · UniProt Q54LT0

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