MolNFT v1 · #141282 · protein
ATVAL2 phd-like domain
5Z28 · B3 domain-containing transcription repressor VAL2: “ATVAL2 phd-like domain”. X-ray diffraction, 1 ligand (ZN), 2 pockets (best druggability 0.63). MolNFT v1 #141282 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5Z28
- Type
- protein
- Length
- 194 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- B3 domain-containing transcription repressor VAL2
- UniProt
- Q5CCK4
- Ligands
- ZN
- Pockets
- 2 · best druggability 0.63
Structure
x-ray diffraction · 2 distinct chains · 27% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | B3 domain-containing transcription repressor VAL2 | protein | 96 | 27% helix, 23% strand | Q5CCK4 |
| B | B3 domain-containing transcription repressor VAL2 | protein | 98 | 27% helix, 21% strand | Q5CCK4 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 264 | 0.63 | 0.81 | 28 | empty |
| 2 | 67 | 0.46 | 0.82 | 18 | GOL |
Interfaces
1 interface between chains.
- A–B · 1042 Ų buried · 18 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5CCK4
- Elsewhere: RCSB PDB 5Z28 · PDBe 5Z28 · UniProt Q5CCK4
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