MolNFT v1 · #141269 · protein

Crystal structure of avrpib

5Z1V · Avrpib protein: “Crystal structure of avrpib”. X-ray diffraction, 1 pocket (best druggability 0.44). MolNFT v1 #141269 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5Z1V
Type: protein
Length: 233 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Avrpib protein
UniProt: A0A0H4ITX1
Pockets: 1 · best druggability 0.44

Structure

x-ray diffraction · 3 distinct chains · 0% helix, 60% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Avrpib protein	protein	58	0% helix, 59% strand	A0A0H4ITX1
B, C	Avrpib protein	protein	61	0% helix, 57% strand	A0A0H4ITX1
D	Avrpib protein	protein	53	0% helix, 64% strand	A0A0H4ITX1

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	118	0.44	0.77	17	empty

Interfaces

4 interfaces between chains.

B–C · 500 Å² buried · 9 hydrogen bonds · protein-protein
A–D · 454 Å² buried · 11 hydrogen bonds · protein-protein
A–C · 96 Å² buried · 0 hydrogen bonds · protein-protein
A–B · 40 Å² buried · 0 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 7 modified (engineered).

Compared structures

5Z1V · Crystal structure of AvrPib · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0H4ITX1
Elsewhere: RCSB PDB 5Z1V · PDBe 5Z1V · UniProt A0A0H4ITX1

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