MolNFT v1 · #141263 · protein
Crystal structure of an ospa mutant
5Z1O · Outer surface protein a: “Crystal structure of an ospa mutant”. X-ray diffraction, 3 pockets (best druggability 0.87). MolNFT v1 #141263 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5Z1O
- Type
- protein
- Length
- 632 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Outer surface protein a
- UniProt
- D0VWU8
- Pockets
- 3 · best druggability 0.87
Structure
x-ray diffraction · 1 distinct chain · 3% helix, 54% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Outer surface protein a | protein | 316 | 3% helix, 54% strand | D0VWU8 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1021 | 0.87 | 0.88 | 136 | empty |
| 2 | 145 | 0.46 | 0.77 | 30 | empty |
| 3 | 140 | 0.40 | 0.74 | 33 | empty |
Interfaces
1 interface between chains.
- A–B · 1367 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 5Z1O · Crystal structure of an OspA mutant · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D0VWU8
- Elsewhere: RCSB PDB 5Z1O · PDBe 5Z1O · UniProt D0VWU8
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